I actually had a very similar experience.
Smart top module in place and I think mashed the key fob in my pocket which attempted to open the top while simultaneously popping the trunk.
I came back to a car with the same warning. I knew something was especially funky because the trunk always electronically seals when you close it and that had stopped working too.
I just left the car alone and came back to everything being fine again. I subsequently sold the smart top because it caused me more grief than convenience.
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